Commands for downloading the multiple reference files required for converting and analysing CNV genotype calls from GenomeStrip/2.0 output in vcf format to Plink/1.9 format.

For Drosophila_melanogaster build dm6. Describes liftover from build dm3 files.

Primarily for Linux use but mostly transferable to mac/unix.

see http://parsecnv.sourceforge.net/

Thanks to Joe Glessner, CHOP.