ImageJ macros from doi:10.1186/1741-7007-10-1
This is a copy of the ImageJ macros and associated supporting documentation originally published with the paper: Wheeler, Gull and Gluenz (2012) "Detailed interrogation of trypanosome cell biology via differential organelle staining and automated image analysis" BMC Biol. 10:1 doi:10.1186/1741-7007-10-1
Originally published online at: http://users.ox.ac.uk/~path0493/ and mirrored at: http://richardwheeler.net/htiaot
The script itself is htiaot.ijm Install in ImageJ (https://imagej.nih.gov/ij/) using Plugins>Macros>Install... View the supporting documentation via htiaot/index.html