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ctffind_runner better error message #1212

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merged 2 commits into from
Nov 29, 2024
Merged

ctffind_runner better error message #1212

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ab241c4
ctffind_runner: more informative error message when CTFFIND fails for…
huwjenkins Nov 27, 2024
db27b77
Add LC_ALL=C to script used to call CTFFIND written by relion_run_ctf…
huwjenkins Nov 28, 2024
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4 changes: 3 additions & 1 deletion src/ctffind_runner.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -460,6 +460,8 @@ void CtffindRunner::joinCtffindResults()

if (verb > 0 && imic % 60 == 0) progress_bar(imic);
}
if (MDctf.isEmpty())
REPORT_ERROR( (std::string) fn_ctffind_exe + " failed to estimate CTF parameters for any micrograph, exiting...");

if (is_tomo)
{
Expand Down Expand Up @@ -692,7 +694,7 @@ void CtffindRunner::executeCtffind4(long int imic)

// Write script to run ctffind
fh << "#!/usr/bin/env " << fn_shell << std::endl;
fh << fn_ctffind_exe << ctffind4_options << " > " << fn_log << " << EOF"<<std::endl;
fh << "env LC_ALL=C " << fn_ctffind_exe << ctffind4_options << " > " << fn_log << " << EOF"<<std::endl;
// line 1: input image
if (do_movie_thon_rings)
{
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