Build and Test GATK 4

VS-1105. Write missing ref ranges as ZERO state, unless dropping that state. #3282

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Triggered via pull request October 23, 2023 16:02

gbggrant

opened #8560

gg_VS-1105_ChangeWritingOfMissingStates

Status Success

Total duration 1h 43m 0s

Artifacts 8

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

3 warnings

WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell

Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.11 GB
test-results-17.0.6+10-cloud Expired	322 KB
test-results-17.0.6+10-integration Expired	3.46 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	282 KB
test-results-docker-17.0.6+10-integration Expired	3.38 MB
test-results-docker-17.0.6+10-unit Expired	153 MB
test-results-docker-17.0.6+10-variantcalling Expired	234 KB