VS-1105. Write missing ref ranges as ZERO state, unless dropping that state. #3282

Job	Run time
build and push gatk docker to artifacts	42m 38s
Validate script WDLs using womtools	2m 5s
Validate generated WDLs using womtools	18m 38s
check if the environment has privileges	2s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	38m 46s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	47m 40s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	43m 17s
WDL test RUN_M2_WDL on cromwell	33m 52s
WDL test RUN_CNN_WDL on cromwell	34m 31s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	22m 51s
Java 17.0.6+10 build and test cloud	28m 54s
Java 17.0.6+10 build and test integration	43m 32s
Java 17.0.6+10 build and test unit	39m 31s
Java 17.0.6+10 test on docker integration	59m 57s
Java 17.0.6+10 test on docker unit	34m 7s
Java 17.0.6+10 test on docker variantcalling	44m 34s
Java 17.0.6+10 test on docker conda	36m 15s
	9h 31m 10s

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