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@khavarilab

Khavari Lab

Our team studies genome regulation in stem cell differentiation and cancer.

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  1. skin-gene-sigs skin-gene-sigs Public

    Gene sets from skin datasets

    Python

  2. atac-encode-snakemake atac-encode-snakemake Public

    Snakemake pipeline to automate running multiple samples through the ENCODE ATAC-seq workflow

    Python

  3. cSCC_multimodal cSCC_multimodal Public

    Analysis scripts for multimodal analysis of cSCC

    R

  4. featurebarcode-qc-snakemake featurebarcode-qc-snakemake Public

    Python 1

  5. prober-manuscript prober-manuscript Public

    Analysis code for PROBER manuscript

    R 1

  6. arvid-home arvid-home Public

    ARVID home page

    R

Repositories

Showing 10 of 10 repositories
  • atac-encode-snakemake Public

    Snakemake pipeline to automate running multiple samples through the ENCODE ATAC-seq workflow

    khavarilab/atac-encode-snakemake’s past year of commit activity
    Python 0 0 0 0 Updated Jan 7, 2025
  • aemvars-home Public

    AEMVARS

    khavarilab/aemvars-home’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 17, 2024
  • arvid-home Public

    ARVID home page

    khavarilab/arvid-home’s past year of commit activity
    R 0 MIT 0 0 0 Updated Dec 17, 2024
  • arvid-skin Public

    ARVID-Skin

    khavarilab/arvid-skin’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 24, 2024
  • arvid-neuro Public

    ARVID-Neuropsychiatry

    khavarilab/arvid-neuro’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 24, 2024
  • arvid-cancers Public

    ARVID-Cancers

    khavarilab/arvid-cancers’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 19, 2024
  • prober-manuscript Public

    Analysis code for PROBER manuscript

    khavarilab/prober-manuscript’s past year of commit activity
    R 0 1 0 0 Updated Jun 1, 2022
  • featurebarcode-qc-snakemake Public
    khavarilab/featurebarcode-qc-snakemake’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 11, 2022
  • cSCC_multimodal Public

    Analysis scripts for multimodal analysis of cSCC

    khavarilab/cSCC_multimodal’s past year of commit activity
    R 0 0 0 0 Updated Jul 28, 2020
  • skin-gene-sigs Public

    Gene sets from skin datasets

    khavarilab/skin-gene-sigs’s past year of commit activity
    Python 0 0 0 0 Updated Sep 20, 2019

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