Gene sets from skin datasets
To use, git clone this repo, go into repo, and install:
python setup.py develop
to run all code, just run
runall -o $OUT_DIR
all outputs will be in the OUT_DIR.
Note that the mapping/quant of the RNA is not in the runall script, the scripts used to align/quant the RNA-seq files is in the src dir.
Note that there are R requirements, check R scripts and install as necessary.