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remove genome
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avani-bhojwani committed Jul 15, 2024
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Expand Up @@ -150,7 +150,7 @@ You can provide the path to the transcriptome assembly fasta file with the `--tr
The typical command for running the pipeline is as follows:

```bash
nextflow run nf-core/denovotranscript --input ./samplesheet.csv --outdir ./results --genome GRCh37 -profile docker
nextflow run nf-core/denovotranscript --input ./samplesheet.csv --outdir ./results -profile docker
```

This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.
Expand Down Expand Up @@ -183,7 +183,6 @@ with `params.yaml` containing:
```yaml
input: './samplesheet.csv'
outdir: './results/'
genome: 'GRCh37'
<...>
```

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