try porting mmseqs/search to nf-test #1527
Triggered via pull request
December 19, 2024 12:45
famosab
Status
Cancelled
Total duration
17m 26s
Artifacts
–
lint.yml
on: pull_request
nf-core-changes
5s
pre-commit
11s
Matrix: nf-core lint modules
confirm-pass
0s
Annotations
25 errors and 4 warnings
|
nf-core lint modules (gatk/unifiedgenotyper)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
|
|
nf-core lint modules (gatk/unifiedgenotyper)
The operation was canceled.
|
|
nf-core lint modules (custom/tabulartogseachip)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
|
|
nf-core lint modules (custom/tabulartogseachip)
The operation was canceled.
|
|
nf-core lint modules (last/train)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
|
|
nf-core lint modules (last/train)
The operation was canceled.
|
|
nf-core lint modules (mmseqs/search)
Process completed with exit code 1.
|
|
nf-core lint modules (tcoffee/align)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
|
|
nf-core lint modules (tcoffee/align)
The operation was canceled.
|
|
nf-core lint modules (wipertools/fastqscatter)
The runner has received a shutdown signal. This can happen when the runner service is stopped, or a manually started runner is canceled.
|
|
nf-core lint modules (wipertools/fastqscatter)
The operation was canceled.
|
|
nf-core lint modules (last/mafconvert)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (last/mafconvert)
The self-hosted runner: ubuntu-2204-x64_i-0e1ca766be627669d lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core lint modules (last/lastdb)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (last/lastdb)
The self-hosted runner: ubuntu-2204-x64_i-01eb44f3451cb2a93 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core lint modules (last/lastal)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (last/lastal)
The self-hosted runner: ubuntu-2204-x64_i-0ad0760f123d586d9 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core lint modules (multivcfanalyzer)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (multivcfanalyzer)
The self-hosted runner: ubuntu-2204-x64_i-0dc43ee5be16b9800 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core lint modules (metamaps/mapdirectly)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (metamaps/mapdirectly)
The self-hosted runner: ubuntu-2204-x64_i-05fae478b91435958 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core lint modules (last/mafswap)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (last/mafswap)
The self-hosted runner: ubuntu-2204-x64_i-0d46fd2f8742cac29 lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core lint modules (flye)
Canceling since a higher priority waiting request for 'Run Linting-7231' exists
|
|
nf-core lint modules (flye)
The self-hosted runner: ubuntu-2204-x64_i-0c0a6f0fb55ebc72a lost communication with the server. Verify the machine is running and has a healthy network connection. Anything in your workflow that terminates the runner process, starves it for CPU/Memory, or blocks its network access can cause this error.
|
|
nf-core-changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pre-commit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
|
|
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|