modules update & possibly anything more

nf-core · Oct 29, 2024 · 30e64e7 · 30e64e7
1 parent a4fd085
commit 30e64e7
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Showing 2 changed files with 117 additions and 8 deletions.
diff --git a/modules/nf-core/parabricks/applybqsr/meta.yml b/modules/nf-core/parabricks/applybqsr/meta.yml
@@ -33,19 +33,19 @@ input:
         description: BAM index file
         pattern: "*.bai"
   - - meta3:
-          type: map
-          description: |
-            Groovy Map containing sample information.
-            e.g. [ id:'test' ]
+        type: map
+        description: |
+          Groovy Map containing sample information.
+          e.g. [ id:'test' ]
     - bqsr_table:
         type: file
         description: Table from calculating BQSR. Output from parabricks/fq2bam or gatk4/baserecalibrator.
         pattern: "*.table"
   - - meta4:
-          type: map
-          description: |
-            Groovy Map containing sample information.
-            e.g. [ id:'test' ]
+        type: map
+        description: |
+          Groovy Map containing sample information.
+          e.g. [ id:'test' ]
     - intervals:
         type: file
         description: intervals

diff --git a/modules/nf-core/parabricks/applybqsr/tests/main.nf.test.snap b/modules/nf-core/parabricks/applybqsr/tests/main.nf.test.snap
@@ -0,0 +1,109 @@
+{
+    "parabricks_applybqsr_intervals": {
+        "content": [
+            {
+                "0": [
+
+                ],
+                "1": [
+
+                ],
+                "2": [
+
+                ],
+                "bai": [
+
+                ],
+                "bam": [
+
+                ],
+                "versions": [
+
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.0"
+        },
+        "timestamp": "2024-10-29T15:44:48.394087"
+    },
+    "parabricks_applybqsr": {
+        "content": [
+            {
+                "0": [
+
+                ],
+                "1": [
+
+                ],
+                "2": [
+
+                ],
+                "bai": [
+
+                ],
+                "bam": [
+
+                ],
+                "versions": [
+
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.0"
+        },
+        "timestamp": "2024-10-29T15:44:37.698654"
+    },
+    "parabricks_applybqsr_intervals_stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.bam:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.bam.bai:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,139b8f2a0926a26cf843ac23daace6d0"
+                ],
+                "bai": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.bam.bai:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "bam": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test.bam:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,139b8f2a0926a26cf843ac23daace6d0"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.0"
+        },
+        "timestamp": "2024-10-29T15:44:57.996768"
+    }
+}