added stub section and updated test

nf-core · Dec 20, 2024 · b25bdde · b25bdde
1 parent 3d107f4
commit b25bdde
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Showing 2 changed files with 18 additions and 5 deletions.
diff --git a/modules/nf-core/bcftools/consensus/main.nf b/modules/nf-core/bcftools/consensus/main.nf
@@ -35,4 +35,17 @@ process BCFTOOLS_CONSENSUS {
         bcftools: \$(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*\$//')
     END_VERSIONS
     """
+
+    stub:
+    def args = task.ext.args ?: ''
+    def prefix = task.ext.prefix ?: "${meta.id}"
+    def masking = mask ? "-m $mask" : ""
+    """
+    touch ${prefix}.fa
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        bcftools: \$(bcftools --version 2>&1 | head -n1 | sed 's/^.*bcftools //; s/ .*\$//')
+    END_VERSIONS
+    """
 }
diff --git a/modules/nf-core/bcftools/consensus/tests/main.nf.test.snap b/modules/nf-core/bcftools/consensus/tests/main.nf.test.snap
@@ -7,7 +7,7 @@
                         {
                             "id": "test"
                         },
-                        "test.fa:md5,313f4a657187fdaf293c4ed69d98c112"
+                        "test.fa:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "1": [
@@ -18,7 +18,7 @@
                         {
                             "id": "test"
                         },
-                        "test.fa:md5,313f4a657187fdaf293c4ed69d98c112"
+                        "test.fa:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "versions": [
@@ -27,10 +27,10 @@
             }
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.04.1"
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.3"
         },
-        "timestamp": "2024-08-20T13:56:14.553364445"
+        "timestamp": "2024-12-20T15:38:55.13767915"
     },
     "bcftools - test": {
         "content": [