Medicines Discovery Catapult

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41 repositories

waters2imzml
Public
This script converts Waters raw data files to imzML format using ProteoWizard (through Docker).
Python
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Other
•0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
COSHH-API
Public
Go API complementing the COSHH UI web app
Go
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Apache License 2.0
•1•0•0•0•Updated Sep 16, 2024Sep 16, 2024
COSHH-UI
Public
Angular web app for tracking the locations and expiry dates of laboratory chemicals
TypeScript
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Apache License 2.0
•1•0•0•0•Updated Sep 3, 2024Sep 3, 2024
image-converter
Public
Web service for cropping .ome.tiff files and combining .tiff files into a single pyramid .ome.tiff file
Go
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Apache License 2.0
•0•0•0•0•Updated Jul 4, 2024Jul 4, 2024
gitlab-ci-cd-versioning
Public
Code versioning and other continuous integration helpers for Gitlab CI/CD pipelines
continuous-integration continuous-delivery ci-cd
Python
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Apache License 2.0
•1•0•0•0•Updated Jul 3, 2024Jul 3, 2024
regex-entity-resolver
Public
Scala web service for identifying terms within text and resolving them to a value
Scala
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Apache License 2.0
•0•0•0•0•Updated Jul 2, 2024Jul 2, 2024
ai-tool-experiments
Public
Lots and lots of LLM agent and RAG demos using crew-ai, langchain & llama-index.
Python
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Apache License 2.0
•0•0•0•0•Updated Jun 27, 2024Jun 27, 2024
supervisor
Public
Part of the Document Library micro service ecosystem. Co-ordinates all the consumer micro services.
cats scala mongodb rabbitmq pekko
Scala
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Apache License 2.0
•0•0•0•0•Updated Jun 26, 2024Jun 26, 2024
unarchiver
Public
Part of the Document Library micro service ecosystem. Uncompresses files that have been archived using zip, tar, gzip, 7zip & more
cats scala mongodb rabbitmq pekko
Scala
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Apache License 2.0
•0•0•0•0•Updated Jun 26, 2024Jun 26, 2024
scala-source-reader
Public
Utility methods to read text from input streams like zip files. Uses Apache Tika
scala tika poi
Scala
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Apache License 2.0
•0•0•0•0•Updated Jun 25, 2024Jun 25, 2024
document-to-text-converter
Public
Part of the Document Library micro service ecosystem. Converts PDFs and other document types to raw text. Uses Apache Tika.
cats pdf scala mongodb rabbitmq tika pekko
Scala
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Apache License 2.0
•0•0•0•0•Updated Jun 25, 2024Jun 25, 2024
spreadsheet-to-text-converter
Public
Part of the Document Library micro service ecosystem. Converts spreadsheets to text.
cats scala mongodb rabbitmq spreadsheet pekko
Scala
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Apache License 2.0
•0•0•0•0•Updated Jun 24, 2024Jun 24, 2024
scala-mongo
Public
Scala wrapper for MongoDB
scala mongodb
Scala
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Apache License 2.0
•1•0•0•0•Updated Jun 24, 2024Jun 24, 2024
prefetch
Public
A Scala based microservice that fetches and processes remote files. Part of the Document Library eco-system
cats scala mongodb rabbitmq pekko pekko-http pekko-connnectors
Scala
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Apache License 2.0
•1•0•0•0•Updated Jun 7, 2024Jun 7, 2024
doclib-common
Public
Common utilities and components used by the document library
cats scala tika prometheus-metrics play-json pekko pekko-streams
Scala
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Apache License 2.0
•1•0•0•0•Updated Jun 7, 2024Jun 7, 2024
scala-utils
Public
A handful of convenience utilities in Scala for things like hashing and concurrency
scala monix play-json
Scala
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Apache License 2.0
•1•0•0•0•Updated Jun 7, 2024Jun 7, 2024
py-mongo
Public
Wrapper for pymongo to allow simple instantiation of MongoDB from configuration.
python mongodb
Python
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Apache License 2.0
•0•1•0•0•Updated May 22, 2024May 22, 2024
py-queue
Public
Module to abstract queues. Currently implements RabbitMQ.
python rabbitmq
Python
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Apache License 2.0
•0•0•0•0•Updated Apr 26, 2024Apr 26, 2024
scala-queue
Public
Use Scala & Pekko to send and receive typed messages with RabbitMQ
scala play-ws-standalone pekko-streams pekko-connnectors
Scala
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Apache License 2.0
•1•0•0•0•Updated Apr 17, 2024Apr 17, 2024
py-config
Public
Python lib that allows environment variables to override hocon style yaml or json config
environment-variables hocon config python
Python
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Apache License 2.0
•2•0•0•0•Updated Feb 14, 2024Feb 14, 2024
py-postgres
Public
Methods to simplify configuring and connecting to Postgresql databases
postgresql python
Python
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Apache License 2.0
•0•0•0•0•Updated Oct 27, 2022Oct 27, 2022
aurac-web-plugin
Public
Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.
proteins genes compounds ner life-sciences firefox chrome
TypeScript
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Apache License 2.0
•0•1•0•0•Updated Sep 27, 2022Sep 27, 2022
PDF-Converter
Public
Webservice to convert PDFs to HTML
webservice converter pdf
JavaScript
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Apache License 2.0
•1•0•0•0•Updated Sep 27, 2022Sep 27, 2022
viawebgl
Public
MDC clone of viawebgl
JavaScript
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MIT License
•0•0•0•0•Updated Sep 16, 2022Sep 16, 2022
openseadragon
Public
MDC clone of openseadragon
JavaScript
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Sep 16, 2022Sep 16, 2022
bio-aurac
Public
Coordinating repository allowing users to run the bio-aurac application.
bioinformatics proteins firefox-extension genes ner life-sciences chrome-extension
JavaScript
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Apache License 2.0
•0•0•0•0•Updated Aug 11, 2022Aug 11, 2022
py-util
Public
Utility methods to help work with lists & dicts
python lists dicts
Python
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Apache License 2.0
•0•0•0•0•Updated Jul 29, 2022Jul 29, 2022
entity-recognition
Public
Web service to recognise entities in html using a redis based dictionary
redis webservice dictionary ner
Go
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Apache License 2.0
•0•0•0•0•Updated Jul 29, 2022Jul 29, 2022
pdffigures2
Public
Given a scholarly PDF, extract figures, tables, captions, and section titles.
Scala
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Apache License 2.0
•125•0•0•0•Updated Jul 11, 2022Jul 11, 2022
biobert
Public
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Python
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Other
•456•0•0•0•Updated Jul 11, 2022Jul 11, 2022