A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
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Aug 18, 2023 - Python
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genotype-phenotype-maps
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A Python API for managing genotype-phenotype map data
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Aug 18, 2023 - Python
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
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Sep 12, 2017 - Jupyter Notebook
Constructs and analyzes genotype/phenotype networks using a list of OMIM phenotypic MIM numbers as input; ranks and clusters disease associated gene sets; runs enrichment analysis on gene sets for mechanism and drug discovery.
bioinformatics genomics networkx drug-discovery drug-repurposing network-analysis genotype-phenotype-maps omim-api drugdiscovery
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Oct 6, 2023 - Python
👨💻🧬🤖 deep neural networks: 1Dconvolution experiments with kernel size and stride length
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Jun 28, 2024 - Jupyter Notebook
Code repository for the analysis of the Genotype-Phenotype Map Properties of the Integer Polyomino Model.
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Dec 8, 2022 - C++
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