NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Toolkit for calling structural variants using short or long reads
A Python library to visualize and analyze long-read transcriptomes
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
Fast and space-efficient taxonomic classification of long reads
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
Suite of tools for use in genome assembly and consensus. Work in progress.
Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
Minor Variant Calling and Phasing Tools
Analyse RNA feature distributions.
Merge transcriptome read-to-genome alignments into non-redundant transcript models
preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
Long read structural variants in rare disease cohort
tool for long read transcriptome assembly
Performs archiving and transfer of Nanopore sequencing data
SIMulator for Long read transcriptome Analysis with RNA DecaY model
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