BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
An MPI+OpenMP hybrid implementation of Gustavson's Sparse Matrix Multiplication for Boolean CSR matrices
Searching for peptide candidates using sparse matrix + matrix/vector multiplication.
Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
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