A collection of awesome things regarding all omics.

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Project Manager for NGS data analysis

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Reconstruction and analysis of viral and host genomes at multi-organ level

Pipelines for NGS data preprocessing by the Bock lab and friends

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

SARS-CoV-2 Genome Assembler

A simple fastp-MultiQC nextflow pipeline

A fast, easy way to present complex bioinformatics pipelines to biologists

FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler

Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

command line and desktop tool for microbial variant calling

scripts associated with yam genome assembly

A flexible, automation and pragmatic workflow tool to process the NGS data.

Protein Analysis and Classifier Toolkit