Nextflow pipeline to assemble genomes from long reads.

Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads

Adapter+Barcode trimming from Pacbio HiFi reads

trimmomatic for long reads

A Nextflow pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.

Variant calling pipeline for Pacbio Hifi reads

pacbiohifi read analyzer using recursion

profiling pacbiokmers and filtering pacbio kmers

multipattern trimmomatic for long reads

streaming visualization of pacbiohifi reads

pacbio/oxford nanopore long reads repeat coverage estimation

Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants

a streamlit application for graphical analyisis of pacbiohifi reads

codegetter for illumina, pacbio and oxford long read and short reads

polyATGC pacbio/oxford nanopore estimator