Modify CreateVariantIngestFiles to write missing ref intervals with t…
65.094% of diff hit (target 52.150%)
View this Pull Request on Codecov
65.094% of diff hit (target 52.150%)
Annotations
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/common/GQStateEnum.java#L45
Added line #L45 was not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/CreateVariantIngestFiles.java#L378-L379
Added lines #L378 - L379 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefCreator.java#L108-L111
Added lines #L108 - L111 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefCreator.java#L128-L131
Added lines #L128 - L131 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefCreator.java#L184-L189
Added lines #L184 - L189 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefCreator.java#L191-L193
Added lines #L191 - L193 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefCreator.java#L195
Added line #L195 was not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefRangesAvroWriter.java#L52
Added line #L52 was not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefRangesBQWriter.java#L30-L34
Added lines #L30 - L34 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefRangesBQWriter.java#L46-L49
Added lines #L46 - L49 were not covered by tests
codecov / codecov/patch
src/main/java/org/broadinstitute/hellbender/tools/gvs/ingest/RefRangesTsvWriter.java#L42
Added line #L42 was not covered by tests