Modify CreateVariantIngestFiles to write missing ref intervals with t…
Codecov / codecov/project
succeeded
Oct 23, 2023 in 0s
82.788% (+30.639%) compared to 9ac0bef
View this Pull Request on Codecov
82.788% (+30.639%) compared to 9ac0bef
Details
Codecov Report
Merging #8560 (c1e334a) into ah_var_store (9ac0bef) will increase coverage by
30.639%.
Report is 16 commits behind head on ah_var_store.
The diff coverage is65.094%.
❗ Current head c1e334a differs from pull request most recent head 10a0a27. Consider uploading reports for the commit 10a0a27 to get more accurate results
@@ Coverage Diff @@
## ah_var_store #8560 +/- ##
=====================================================
+ Coverage 52.150% 82.788% +30.639%
- Complexity 30538 38148 +7610
=====================================================
Files 2421 2422 +1
Lines 189608 189674 +66
Branches 20679 20684 +5
=====================================================
+ Hits 98880 157028 +58148
+ Misses 84409 25369 -59040
- Partials 6319 7277 +958 | Files | Coverage Δ | |
|---|---|---|
| ...itute/hellbender/tools/gvs/common/SchemaUtils.java | 56.667% <100.000%> (+4.815%) |
⬆️ |
| ...e/hellbender/tools/gvs/ingest/RefRangesWriter.java | 50.000% <ø> (ø) |
|
| ...ngest/CreateVariantIngestFilesIntegrationTest.java | 100.000% <100.000%> (ø) |
|
| ...te/hellbender/tools/gvs/utils/SchemaUtilsTest.java | 100.000% <100.000%> (ø) |
|
| ...itute/hellbender/tools/gvs/common/GQStateEnum.java | 92.000% <93.750%> (-3.238%) |
⬇️ |
| ...llbender/tools/gvs/ingest/RefRangesAvroWriter.java | 0.000% <0.000%> (ø) |
|
| ...ellbender/tools/gvs/ingest/RefRangesTsvWriter.java | 95.833% <0.000%> (-4.167%) |
⬇️ |
| ...der/tools/gvs/ingest/CreateVariantIngestFiles.java | 43.182% <71.429%> (+2.382%) |
⬆️ |
| ...hellbender/tools/gvs/ingest/RefRangesBQWriter.java | 0.000% <0.000%> (ø) |
|
| ...titute/hellbender/tools/gvs/ingest/RefCreator.java | 47.945% <32.258%> (-2.055%) |
⬇️ |
Loading