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VS 1102 add vds creation wdl to integration tests Build and Test GATK 4 #3293: Pull request #8554 synchronize by RoriCremer
October 23, 2023 20:22 1h 40m 54s rc-vs-1102-add-vds-wdl-to-integration-tests
rc-vs-1102-add-vds-wdl-to-integration-tests
October 23, 2023 20:22 1h 40m 54s
Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment. Build and Test GATK 4 #3291: Pull request #8561 synchronize by samuelklee
October 23, 2023 20:15 1h 41m 22s sl_python_version_update
sl_python_version_update
October 23, 2023 20:15 1h 41m 22s
VS-1105. Write missing ref ranges as ZERO state, unless dropping that state. Build and Test GATK 4 #3290: Pull request #8560 synchronize by gbggrant
October 23, 2023 19:31 1h 38m 16s gg_VS-1105_ChangeWritingOfMissingStates
gg_VS-1105_ChangeWritingOfMissingStates
October 23, 2023 19:31 1h 38m 16s
VS-1105. Write missing ref ranges as ZERO state, unless dropping that state. Build and Test GATK 4 #3289: Pull request #8560 synchronize by gbggrant
October 23, 2023 18:43 1h 41m 27s gg_VS-1105_ChangeWritingOfMissingStates
gg_VS-1105_ChangeWritingOfMissingStates
October 23, 2023 18:43 1h 41m 27s
Updated Python and PyMC, removed TensorFlow, and added PyTorch in conda environment. Build and Test GATK 4 #3288: Pull request #8561 opened by samuelklee
October 23, 2023 18:31 43m 55s sl_python_version_update
sl_python_version_update
October 23, 2023 18:31 43m 55s
VS 1102 add vds creation wdl to integration tests Build and Test GATK 4 #3287: Pull request #8554 synchronize by RoriCremer
October 23, 2023 17:58 1h 22m 42s rc-vs-1102-add-vds-wdl-to-integration-tests
rc-vs-1102-add-vds-wdl-to-integration-tests
October 23, 2023 17:58 1h 22m 42s
VS 1102 add vds creation wdl to integration tests Build and Test GATK 4 #3286: Pull request #8554 synchronize by RoriCremer
October 23, 2023 17:46 1h 21m 59s rc-vs-1102-add-vds-wdl-to-integration-tests
rc-vs-1102-add-vds-wdl-to-integration-tests
October 23, 2023 17:46 1h 21m 59s
Make BigQuery command line calls more consistent across WDLs [VS-458] Build and Test GATK 4 #3285: Pull request #8529 synchronize by rsasch
October 23, 2023 17:08 1h 20m 22s rsa_vs_458
rsa_vs_458
October 23, 2023 17:08 1h 20m 22s
VS 1102 add vds creation wdl to integration tests Build and Test GATK 4 #3284: Pull request #8554 synchronize by RoriCremer
October 23, 2023 16:56 1h 41m 57s rc-vs-1102-add-vds-wdl-to-integration-tests
rc-vs-1102-add-vds-wdl-to-integration-tests
October 23, 2023 16:56 1h 41m 57s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3283: Pull request #8553 synchronize by mcovarr
October 23, 2023 16:56 1h 40m 17s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 23, 2023 16:56 1h 40m 17s
VS-1105. Write missing ref ranges as ZERO state, unless dropping that state. Build and Test GATK 4 #3282: Pull request #8560 opened by gbggrant
October 23, 2023 16:02 1h 43m 0s gg_VS-1105_ChangeWritingOfMissingStates
gg_VS-1105_ChangeWritingOfMissingStates
October 23, 2023 16:02 1h 43m 0s
Bitpacking fixup [VS-1104] Build and Test GATK 4 #3281: Pull request #8559 opened by mcovarr
October 23, 2023 12:44 1h 25m 28s vs_1104_bitpatching
vs_1104_bitpatching
October 23, 2023 12:44 1h 25m 28s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3280: Pull request #8553 synchronize by mcovarr
October 20, 2023 22:43 1h 27m 17s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 20, 2023 22:43 1h 27m 17s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3279: Pull request #8553 synchronize by mcovarr
October 20, 2023 22:41 1h 21m 13s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 20, 2023 22:41 1h 21m 13s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3278: Pull request #8553 synchronize by mcovarr
October 20, 2023 21:57 1h 22m 39s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 20, 2023 21:57 1h 22m 39s
Rewrite complex SV functional annotation in SVAnnotate Build and Test GATK 4 #3276: Pull request #8516 synchronize by epiercehoffman
October 20, 2023 20:23 1h 23m 50s eph_cpx_svannotate
eph_cpx_svannotate
October 20, 2023 20:23 1h 23m 50s
VS 1102 add vds creation wdl to integration tests Build and Test GATK 4 #3275: Pull request #8554 synchronize by RoriCremer
October 20, 2023 02:32 1h 40m 18s rc-vs-1102-add-vds-wdl-to-integration-tests
rc-vs-1102-add-vds-wdl-to-integration-tests
October 20, 2023 02:32 1h 40m 18s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3274: Pull request #8553 synchronize by mcovarr
October 19, 2023 19:49 1h 36m 8s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 19, 2023 19:49 1h 36m 8s
Fixing LoadData error discovered in delcho run Build and Test GATK 4 #3273: Pull request #8556 synchronize by koncheto-broad
October 18, 2023 20:40 1h 28m 0s delcho_write_missing_intervals_error
delcho_write_missing_intervals_error
October 18, 2023 20:40 1h 28m 0s
Fixing LoadData error discovered in delcho run Build and Test GATK 4 #3272: Pull request #8556 opened by koncheto-broad
October 18, 2023 19:24 1h 38m 56s delcho_write_missing_intervals_error
delcho_write_missing_intervals_error
October 18, 2023 19:24 1h 38m 56s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3271: Pull request #8553 synchronize by mcovarr
October 18, 2023 18:27 1h 33m 37s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 18, 2023 18:27 1h 33m 37s
Phasing and GT removal in VDS [VS-1060] [VS-1122] [VS-1123] Build and Test GATK 4 #3270: Pull request #8553 synchronize by mcovarr
October 18, 2023 18:06 1h 43m 22s vs_1060_phasing_into_vds
vs_1060_phasing_into_vds
October 18, 2023 18:06 1h 43m 22s
AOU deliverables doc updates [VS-1073] Build and Test GATK 4 #3269: Pull request #8551 synchronize by gbggrant
October 18, 2023 14:59 1h 32m 39s vs_1073_aou_deliverables_doc
vs_1073_aou_deliverables_doc
October 18, 2023 14:59 1h 32m 39s
AOU deliverables doc updates [VS-1073] Build and Test GATK 4 #3268: Pull request #8551 synchronize by gbggrant
October 18, 2023 14:56 1h 23m 47s vs_1073_aou_deliverables_doc
vs_1073_aou_deliverables_doc
October 18, 2023 14:56 1h 23m 47s
VS 1102 add vds creation wdl to integration tests Build and Test GATK 4 #3267: Pull request #8554 opened by RoriCremer
October 17, 2023 20:22 1h 28m 2s rc-vs-1102-add-vds-wdl-to-integration-tests
rc-vs-1102-add-vds-wdl-to-integration-tests
October 17, 2023 20:22 1h 28m 2s
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